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Agrigenomics: Genotyping for Plant and Animal Breeding

Modern breeding programmes depend on making accurate selection decisions as early as possible. Whether screening populations for key traits, implementing genomic selection or confirming livestock parentage, breeding teams need reliable genotype data and scalable, cost-effective workflows. At LGC, we help breeding organisations implement efficient genotyping strategies that support marker-assisted selection, genomic selection and large-scale genetic screening, generating reliable data for confident selection decisions and accelerated genetic gain.

Supporting agrigenomics and plant breeding programmes.

Challenges in modern agrigenomics programmes

Breeding programmes are under increasing pressure to improve selection accuracy, process larger populations and deliver results faster, all while maintaining cost efficiency.

High-throughput genotyping

Processing millions of samples without compromising data quality or turnaround times.

Cost per data point

Balancing budget constraints with throughput, data quality, marker density and operational costs to achieve the most cost-effective genotyping strategy.

Trait screening

Identifying genetic markers associated with yield, quality, disease resistance and genetic gain to support trait selection and breeding decisions.

Sample quality

Generating reliable results from diverse plant and animal sample types.

Genomic selection

Producing high-quality genotype data that supports accurate prediction models and selection decisions.

Programme scale

Expanding workflows from hundreds to millions of samples.

How LGC supports plant and animal breeding programmes

Helping breeding organisations implement efficient genotyping strategies that align with breeding objectives, throughput requirements and budget constraints.

Who we support

Plant breeders, molecular breeding scientists, livestock geneticists and agricultural service laboratories responsible for genetic improvement programmes.

How we help

We provide sample collection kits, DNA extraction chemistries, genotyping and sequencing solutions, automation workflows and scientific expertise that support marker-assisted selection, genomic selection, parentage testing and large-scale breeding programmes.

Agrigenomics solutions

Accurate genotyping for breeding programmes.

KASP genotyping assays

Accurate SNP and InDel genotyping for marker-assisted selection, genomic selection and germplasm screening.

KASP genotyping assays
Sbeadex Lightning Plant DNA Kit box packaging

Plant and animal DNA extraction

Extraction workflows designed to support diverse agricultural sample types and throughput requirements.

Plant and animal DNA extraction
Supporting scalable molecular testing and genomic workflows.

SNPline workflow solutions

Flexible and scalable genotyping workflows developed for small and large breeding populations.

SNPline workflow solutions
Supporting marker discovery and genomic analysis.

NGS and GBS solutions

Support marker discovery, genome characterisation and genomic selection projects.

NGS and GBS solutions

Why breeding organisations choose LGC

Supporting agrigenomics programmes from marker discovery to routine breeding operations

Agrigenomics expertise

Supporting crop and livestock breeding programmes with genotyping technologies used across hundreds of species and diverse agricultural applications.

Proven genotyping technology

KASPâ„¢ genotyping technology is widely used for marker-assisted selection, genomic selection and germplasm screening across breeding programmes worldwide.

Solutions that scale

From targeted marker screening to population-scale genotyping, we help organisations align workflows with breeding programme requirements.

Employees

1,500+

Experts supporting global science

Products

11,000+

Products supporting research and production workflows

Breeding

Genotyping Strategies for Complex Genomes

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Frequently asked questions

What is agrigenomics?

Agrigenomics applies genomic technologies to agriculture, enabling breeders to identify, select and track genetic traits in plants and animals to improve breeding outcomes.

What is SNP genotyping used for in breeding programmes?

SNP genotyping supports trait screening, marker-assisted selection, parentage verification, purity testing, variety identification and genomic selection.

What is marker-assisted selection?

Marker-assisted selection uses genetic markers associated with desirable traits to identify the most suitable breeding candidates before phenotypic characteristics are fully expressed.

How does genomic selection differ from marker-assisted selection?

Marker-assisted selection (MAS) relies on low-density genotyping using a limited set of informative markers, while genomic selection uses high-density, genome-wide marker data to estimate breeding values and improve selection accuracy for complex, polygenic traits.

What is parentage testing in livestock breeding?

Parentage testing uses DNA markers to verify pedigree information and improve breeding records.

Can genotyping be performed from crude plant extracts?

Yes. Certain workflows can generate reliable genotyping results directly from crude plant extracts, reducing processing time and lowering per-sample costs.

How do breeding programmes choose between PCR, sequencing and arrays?

Technology selection typically depends on sample numbers, marker requirements, throughput targets, project objectives and overall cost per data point.

Why is cost per data point important in agrigenomics?

Large breeding programmes often process tens of thousands of samples, making workflow efficiency and total testing economics critical considerations alongside analytical performance.

What is seed purity testing?

Seed purity testing evaluates genetic consistency within a seed lot and helps confirm that materials meet defined breeding, commercial or regulatory requirements.

Can LGC support customised breeding projects?

Yes. LGC supports breeding organisations with assay development, genotyping strategies, DNA extraction workflows and scalable testing solutions tailored to programme needs.

Discuss your breeding programme

Whether you are implementing marker-assisted selection, expanding genomic selection, developing a new SNP panel or scaling genotyping across large breeding populations, our specialists can help evaluate technologies, optimise workflows and identify the most appropriate genotyping strategy for your programme.